# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
# $Id$

PortSystem              1.0
PortGroup               github 1.0

github.setup            samtools bcftools 1.2
categories              science
platforms               darwin
maintainers             ryandesign openmaintainer
license                 {MIT GPL-3}

description             utilities for variant calling and manipulating VCF and \
                        BCF files

long_description        BCFtools implements utilities for variant calling (in \
                        conjunction with SAMtools) and manipulating VCF and \
                        BCF files. The program is intended to replace the \
                        Perl-based tools from vcftools.

checksums               rmd160  84be17525ff3106d3193ed262e70edbaf60495f0 \
                        sha256  53c628339020dd45334a007c9cefdaf1cba3f1032492ec813b116379fa684fd6

homepage                http://www.htslib.org/
github.tarball_from     releases
use_bzip2               yes

depends_lib             port:zlib

use_configure           no

variant universal {}

build.args              CC="${configure.cc} [get_canonical_archflags cc]"

destroot.args-append    prefix=${prefix}

post-destroot {
    xinstall -d ${destroot}${prefix}/share/doc/${name}
    xinstall -m 644 -W ${worksrcpath} \
        AUTHORS LICENSE README \
        ${destroot}${prefix}/share/doc/${name}
}