# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
# $Id$

PortSystem          1.0

name                PEAR
version             0.9.8
categories          science
platforms           darwin
license             CC-BY-NC-SA-3
maintainers         yahoo.com:mashavecher

description         PEAR - Paired-End reAd mergeR

long_description    PEAR is an ultrafast, memory-efficient and highly \
                    accurate pair-end read merger. It is fully parallelized \
                    and can run with as low as just a few kilobytes of memory.

homepage            http://www.exelixis-lab.org/web/software/pear
master_sites        http://sco.h-its.org/exelixis/web/software/pear/files/
distname            pear-${version}

checksums           rmd160  c9703233b188527dcd281f6a2cc5f924a3a3828a \
                    sha256  0fff7401d63141d9235aa28174113f346a039743c0c679b435f5230a32b28728

depends_lib         port:bzip2 \
                    port:zlib

patchfiles          patch-configure.diff

notes "
The PEAR creative commons license prohibits commercial use of the code.\
For testing and using PEAR on a commercial basis you need to purchase a\
commercial software license.\
If you wish to purchase such a license please contact:

Prof. Alexandros Stamatakis <Alexandros.Stamatakis@h-its.org>

Citation - PEAR: a fast and accurate Illumina Paired-End reAd mergeR
Zhang et al (2014) Bioinformatics 30(5): 614-620 | doi:10.1093/bioinformatics/btt593
"