# $Id$ PortSystem 1.0 name cufflinks version 0.9.3 categories science biology platforms darwin maintainers gmail.com:haroldpimentel license Boost description Cufflinks assembles transcripts, estimates their abundances,\ and tests for differential expression and regulation in RNA-Seq samples. long_description Cufflinks assembles transcripts, estimates their abundances, \ and tests for differential expression and regulation in RNA-Seq \ samples. It accepts aligned RNA-Seq reads and assembles the \ alignments into a parsimonious set of transcripts. \ Cufflinks then estimates the relative abundances of these \ transcripts based on how many reads support each one. homepage http://cufflinks.cbcb.umd.edu/ master_sites ${homepage}downloads checksums sha1 f6c28d8f98569f8d1eae72ff050ce7d2d06bfba4\ rmd160 b9b3b8ec322e79e0e6f2b4b2f23de27b58ec44f4 depends_lib port:zlib \ port:samtools \ port:boost # samtools is not universal universal_variant no post-destroot { xinstall -d ${destroot}${prefix}/share/doc/${name} xinstall -m 644 -W ${worksrcpath} \ AUTHORS \ LICENSE \ README \ ${destroot}${prefix}/share/doc/${name} }