# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
# $Id$

PortSystem              1.0
PortGroup               github 1.0

github.setup            samtools samtools 1.2
revision                1
categories              science
platforms               darwin
maintainers             gmail.com:haroldpimentel openmaintainer
license                 MIT

description             Tools for alignments in the SAM format

long_description        SAM (Sequence Alignment/Map) Tools provide various \
                        utilities for manipulating alignments in the SAM \
                        format, including sorting, merging, indexing and \
                        generating alignments in a per-position format.

checksums               rmd160  536dcdc1c7730bc4a93f68e39967890331211c24 \
                        sha256  420e7a4a107fe37619b9d300b6379452eb8eb04a4a9b65c3ec69de82ccc26daa

homepage                http://www.htslib.org/
github.tarball_from     releases
use_bzip2               yes

depends_lib             port:zlib port:ncurses

use_configure           no

variant universal {}

build.args              CC="${configure.cc} [get_canonical_archflags cc]"

destroot {
    xinstall -m 755 ${worksrcpath}/samtools ${destroot}${prefix}/bin
    xinstall -m 644 ${worksrcpath}/libbam.a ${destroot}${prefix}/lib
    xinstall -m 644 ${worksrcpath}/samtools.1 ${destroot}${prefix}/share/man/man1
    xinstall -d ${destroot}${prefix}/include/bam
    eval xinstall -m 644 [glob ${worksrcpath}/*.h] ${destroot}${prefix}/include/bam
    
    xinstall -d ${destroot}${prefix}/share/doc/${name}
    xinstall -m 644 -W ${worksrcpath} \
        AUTHORS LICENSE NEWS README \
        ${destroot}${prefix}/share/doc/${name}
}