# $Id$

PortSystem 1.0

name                hmmer
version             3.0
epoch               1
categories          science
maintainers         mmoll openmaintainer
license             GPL-3
description         HMMER searches biological sequence databases for \
        homologous sequences.
long_description    HMMER searches biological sequence databases for \
        homologous sequences, using either single sequences or multiple \
        sequence alignments as queries. HMMER implements a technology \
        called "profile hidden Markov models" (profile HMMs). HMMER is \
        the software engine underlying many protein family domain \
        databases and large-scale annotation pipelines, including the \
        Pfam and SMART databases.
homepage            http://hmmer.janelia.org/
platforms           darwin
master_sites        ftp://selab.janelia.org/pub/software/hmmer3/${version}/
checksums           md5     4cf685f3bc524ba5b5cdaaa070a83588 \
                    sha1    77803c0bdb3ab07b7051a4c68c0564de31940c6d \
                    rmd160  681967fd0d2c0104ca9e080688d9652a187a8b45
use_parallel_build  no
livecheck.type      regex
livecheck.url       ${homepage}/software
livecheck.regex     The <strong>current version</strong> is HMMER <strong>(\[0-9.brc\]+)</strong>