# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
# $Id$

PortSystem              1.0

name                    samtools
version                 0.1.18
categories              science
platforms               darwin
maintainers             gmail.com:haroldpimentel openmaintainer
license                 MIT

description             Tools for alignments in the SAM format

long_description        SAM (Sequence Alignment/Map) Tools provide various \
                        utilities for manipulating alignments in the SAM \
                        format, including sorting, merging, indexing and \
                        generating alignments in a per-position format.

homepage                http://samtools.sourceforge.net/
master_sites            sourceforge

checksums               rmd160  0301de58e31c7529a2535086be0cc7d93778ede8 \
                        sha256  f3faaf34430d4782956562eb72906289e8e34d44d0c4d73837bdbeead7746b16

use_bzip2               yes

depends_lib             port:zlib port:ncurses

use_configure           no

compiler.blacklist      clang

build.args              CC=${configure.cc} \
                        CFLAGS="-g -Wall ${configure.cflags} ${configure.cc_archflags}"

destroot {
    xinstall -m 755 ${worksrcpath}/samtools ${destroot}${prefix}/bin
    xinstall -m 644 ${worksrcpath}/libbam.a ${destroot}${prefix}/lib
    xinstall -d ${destroot}${prefix}/include/bam
    eval xinstall -m 644 [glob ${worksrcpath}/*.h] ${destroot}${prefix}/include/bam
    
    xinstall -d ${destroot}${prefix}/share/doc/${name}
    xinstall -m 644 -W ${worksrcpath} \
        AUTHORS COPYING ChangeLog NEWS \
        ${destroot}${prefix}/share/doc/${name}
}